J6_9RFW_001
3D structure
- PDB id
- 9RFW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 9RFW|1|a|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RFW|1|a|G|45
9RFW|1|a|G|46
*
9RFW|1|a|C|179
9RFW|1|a|G|180
9RFW|1|a|A|181
9RFW|1|a|A|182
9RFW|1|a|C|183
*
9RFW|1|a|G|214
9RFW|1|a|G|215
9RFW|1|a|A|216
9RFW|1|a|A|217
9RFW|1|a|A|218
9RFW|1|a|A|219
9RFW|1|a|G|220
9RFW|1|a|A|221
9RFW|1|a|A|222
9RFW|1|a|A|223
9RFW|1|a|U|224
*
9RFW|1|a|A|231
9RFW|1|a|G|232
9RFW|1|a|A|233
9RFW|1|a|U|234
9RFW|1|a|U|235
*
9RFW|1|a|A|262
9RFW|1|a|G|263
9RFW|1|a|C|264
9RFW|1|a|A|265
9RFW|1|a|G|266
*
9RFW|1|a|C|426
9RFW|1|a|U|427
9RFW|1|a|A|428
9RFW|1|a|A|429
9RFW|1|a|A|430
9RFW|1|a|U|431
9RFW|1|a|A|432
9RFW|1|a|C|433
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain D
- Manikomycin
Coloring options: