Loop J6_9RPV

3D structure

PDB id: 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the ZAK-bound human disome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.35 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9RPV|1|M5|G|3922, 9RPV|1|M5|A|4376, 9RPV|1|M5|A|4378, 9RPV|1|M5|A|4379
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9RPV|1|M5|PSU|3920
9RPV|1|M5|U|3921
9RPV|1|M5|G|3922
9RPV|1|M5|A|3923
*
9RPV|1|M5|U|4188
9RPV|1|M5|U|4189
9RPV|1|M5|U|4190
9RPV|1|M5|G|4191
*
9RPV|1|M5|C|4204
9RPV|1|M5|A|4205
*
9RPV|1|M5|OMU|4227
9RPV|1|M5|OMG|4228
9RPV|1|M5|U|4229
9RPV|1|M5|C|4230
*
9RPV|1|M5|G|4331
9RPV|1|M5|C|4332
9RPV|1|M5|C|4333
9RPV|1|M5|U|4334
9RPV|1|M5|C|4335
9RPV|1|M5|A|4336
9RPV|1|M5|C|4337
9RPV|1|M5|G|4338
9RPV|1|M5|A|4339
9RPV|1|M5|U|4340
9RPV|1|M5|C|4341
9RPV|1|M5|C|4342
*
9RPV|1|M5|OMG|4370
9RPV|1|M5|G|4371
9RPV|1|M5|U|4372
9RPV|1|M5|G|4373
9RPV|1|M5|U|4374
9RPV|1|M5|C|4375
9RPV|1|M5|A|4376
9RPV|1|M5|G|4377
9RPV|1|M5|A|4378
9RPV|1|M5|A|4379
9RPV|1|M5|A|4380
9RPV|1|M5|A|4381

Current chains

Chain M5: 28S rRNA of the stalled 80S

Nearby chains

Chain E5: Transfer RNA; tRNA
Chain MA: Large ribosomal subunit protein uL2
Chain MN: 60S ribosomal protein L15
Chain MQ: 60S ribosomal protein L18
Chain MT: 60S ribosomal protein L21
Chain Ma: Large ribosomal subunit protein uL15
Chain Mb: Large ribosomal subunit protein eL29
Chain Mo: Large ribosomal subunit protein eL42

J6_9RPV_006