J6_9RUC_003
3D structure
- PDB id
- 9RUC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9RUC|1|L5|G|3922, 9RUC|1|L5|C|4337, 9RUC|1|L5|A|4376, 9RUC|1|L5|A|4378, 9RUC|1|L5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RUC|1|L5|PSU|3920
9RUC|1|L5|U|3921
9RUC|1|L5|G|3922
9RUC|1|L5|A|3923
*
9RUC|1|L5|U|4188
9RUC|1|L5|U|4189
9RUC|1|L5|U|4190
9RUC|1|L5|G|4191
*
9RUC|1|L5|C|4204
9RUC|1|L5|A|4205
*
9RUC|1|L5|OMU|4227
9RUC|1|L5|OMG|4228
9RUC|1|L5|U|4229
9RUC|1|L5|C|4230
*
9RUC|1|L5|G|4331
9RUC|1|L5|C|4332
9RUC|1|L5|C|4333
9RUC|1|L5|U|4334
9RUC|1|L5|C|4335
9RUC|1|L5|A|4336
9RUC|1|L5|C|4337
9RUC|1|L5|G|4338
9RUC|1|L5|A|4339
9RUC|1|L5|U|4340
9RUC|1|L5|C|4341
9RUC|1|L5|C|4342
*
9RUC|1|L5|OMG|4370
9RUC|1|L5|G|4371
9RUC|1|L5|U|4372
9RUC|1|L5|G|4373
9RUC|1|L5|U|4374
9RUC|1|L5|C|4375
9RUC|1|L5|A|4376
9RUC|1|L5|G|4377
9RUC|1|L5|A|4378
9RUC|1|L5|A|4379
9RUC|1|L5|A|4380
9RUC|1|L5|A|4381
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42
- Chain Pt
- Transfer RNA; tRNA
- Chain S6
- Transfer RNA; tRNA
Coloring options: