J6_9SPF_002
3D structure
- PDB id
- 9SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 9SPF|1|L5|C|1501, 9SPF|1|L5|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPF|1|L5|C|1352
9SPF|1|L5|G|1353
9SPF|1|L5|A|1354
9SPF|1|L5|G|1355
*
9SPF|1|L5|C|1384
9SPF|1|L5|G|1385
9SPF|1|L5|C|1386
9SPF|1|L5|A|1387
9SPF|1|L5|A|1388
*
9SPF|1|L5|U|1395
9SPF|1|L5|G|1396
9SPF|1|L5|A|1397
9SPF|1|L5|A|1398
9SPF|1|L5|G|1399
*
9SPF|1|L5|C|1418
9SPF|1|L5|G|1419
9SPF|1|L5|A|1420
9SPF|1|L5|G|1421
*
9SPF|1|L5|C|1464
9SPF|1|L5|G|1465
9SPF|1|L5|G|1466
*
9SPF|1|L5|C|1499
9SPF|1|L5|A|1500
9SPF|1|L5|C|1501
9SPF|1|L5|G|1502
9SPF|1|L5|A|1503
9SPF|1|L5|G|1504
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LQ
- 60S ribosomal protein L18
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Li
- 60S ribosomal protein L36
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