J6_9SRE_001
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GC*GGAAC*GGAAAAGAAA(OMG)*CGAUG*CACAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 9SRE|1|1|A|327
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|1|G|159
9SRE|1|1|C|160
*
9SRE|1|1|G|283
9SRE|1|1|G|284
9SRE|1|1|A|285
9SRE|1|1|A|286
9SRE|1|1|C|287
*
9SRE|1|1|G|318
9SRE|1|1|G|319
9SRE|1|1|A|320
9SRE|1|1|A|321
9SRE|1|1|A|322
9SRE|1|1|A|323
9SRE|1|1|G|324
9SRE|1|1|A|325
9SRE|1|1|A|326
9SRE|1|1|A|327
9SRE|1|1|OMG|328
*
9SRE|1|1|C|335
9SRE|1|1|G|336
9SRE|1|1|A|337
9SRE|1|1|U|338
9SRE|1|1|G|339
*
9SRE|1|1|C|366
9SRE|1|1|A|367
9SRE|1|1|C|368
9SRE|1|1|A|369
9SRE|1|1|G|370
*
9SRE|1|1|C|581
9SRE|1|1|U|582
9SRE|1|1|A|583
9SRE|1|1|A|584
9SRE|1|1|A|585
9SRE|1|1|U|586
9SRE|1|1|A|587
9SRE|1|1|C|588
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bk
- C2H2-type domain-containing protein
Coloring options: