J6_9SRO_001

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9SRO|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRO|1|a|G|45
9SRO|1|a|G|46
*
9SRO|1|a|C|179
9SRO|1|a|G|180
9SRO|1|a|A|181
9SRO|1|a|A|182
9SRO|1|a|C|183
*
9SRO|1|a|G|214
9SRO|1|a|G|215
9SRO|1|a|A|216
9SRO|1|a|A|217
9SRO|1|a|A|218
9SRO|1|a|A|219
9SRO|1|a|G|220
9SRO|1|a|A|221
9SRO|1|a|A|222
9SRO|1|a|A|223
9SRO|1|a|U|224
*
9SRO|1|a|A|231
9SRO|1|a|G|232
9SRO|1|a|A|233
9SRO|1|a|U|234
9SRO|1|a|U|235
*
9SRO|1|a|A|262
9SRO|1|a|G|263
9SRO|1|a|C|264
9SRO|1|a|A|265
9SRO|1|a|G|266
*
9SRO|1|a|C|426
9SRO|1|a|U|427
9SRO|1|a|A|428
9SRO|1|a|A|429
9SRO|1|a|A|430
9SRO|1|a|U|431
9SRO|1|a|A|432
9SRO|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34