J6_9SS6_001

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9SS6|1|D2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS6|1|D2|G|45
9SS6|1|D2|G|46
*
9SS6|1|D2|C|179
9SS6|1|D2|G|180
9SS6|1|D2|A|181
9SS6|1|D2|A|182
9SS6|1|D2|C|183
*
9SS6|1|D2|G|214
9SS6|1|D2|G|215
9SS6|1|D2|A|216
9SS6|1|D2|A|217
9SS6|1|D2|A|218
9SS6|1|D2|A|219
9SS6|1|D2|G|220
9SS6|1|D2|A|221
9SS6|1|D2|A|222
9SS6|1|D2|A|223
9SS6|1|D2|U|224
*
9SS6|1|D2|A|231
9SS6|1|D2|G|232
9SS6|1|D2|A|233
9SS6|1|D2|U|234
9SS6|1|D2|U|235
*
9SS6|1|D2|A|262
9SS6|1|D2|G|263
9SS6|1|D2|C|264
9SS6|1|D2|A|265
9SS6|1|D2|G|266
*
9SS6|1|D2|C|426
9SS6|1|D2|U|427
9SS6|1|D2|A|428
9SS6|1|D2|A|429
9SS6|1|D2|A|430
9SS6|1|D2|U|431
9SS6|1|D2|A|432
9SS6|1|D2|C|433

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BG

Small ribosomal subunit protein bS20