J6_9T0Y_001

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9T0Y|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T0Y|1|a|G|45
9T0Y|1|a|G|46
*
9T0Y|1|a|C|179
9T0Y|1|a|G|180
9T0Y|1|a|A|181
9T0Y|1|a|A|182
9T0Y|1|a|C|183
*
9T0Y|1|a|G|214
9T0Y|1|a|G|215
9T0Y|1|a|A|216
9T0Y|1|a|A|217
9T0Y|1|a|A|218
9T0Y|1|a|A|219
9T0Y|1|a|G|220
9T0Y|1|a|A|221
9T0Y|1|a|A|222
9T0Y|1|a|A|223
9T0Y|1|a|U|224
*
9T0Y|1|a|A|231
9T0Y|1|a|G|232
9T0Y|1|a|A|233
9T0Y|1|a|U|234
9T0Y|1|a|U|235
*
9T0Y|1|a|A|262
9T0Y|1|a|G|263
9T0Y|1|a|C|264
9T0Y|1|a|A|265
9T0Y|1|a|G|266
*
9T0Y|1|a|C|426
9T0Y|1|a|U|427
9T0Y|1|a|A|428
9T0Y|1|a|A|429
9T0Y|1|a|A|430
9T0Y|1|a|U|431
9T0Y|1|a|A|432
9T0Y|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34