Loop J6_9TI6

3D structure

PDB id: 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.62 Å

Loop

Sequence: UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 9TI6|1|A|U|2103, 9TI6|1|A|A|2415, 9TI6|1|A|U|2417, 9TI6|1|A|G|2455, 9TI6|1|A|A|2457, 9TI6|1|A|U|2458
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9TI6|1|A|U|2101
9TI6|1|A|U|2102
9TI6|1|A|U|2103
9TI6|1|A|A|2104
*
9TI6|1|A|U|2270
9TI6|1|A|U|2271
9TI6|1|A|U|2272
9TI6|1|A|G|2273
*
9TI6|1|A|C|2285
9TI6|1|A|G|2286
*
9TI6|1|A|C|2308
9TI6|1|A|G|2309
9TI6|1|A|C|2310
9TI6|1|A|U|2311
*
9TI6|1|A|A|2411
9TI6|1|A|C|2412
9TI6|1|A|U|2413
9TI6|1|A|U|2414
9TI6|1|A|A|2415
9TI6|1|A|G|2416
9TI6|1|A|U|2417
9TI6|1|A|G|2418
9TI6|1|A|A|2419
9TI6|1|A|U|2420
9TI6|1|A|C|2421
9TI6|1|A|C|2422
*
9TI6|1|A|G|2448
9TI6|1|A|C|2449
9TI6|1|A|U|2450
9TI6|1|A|C|2451
9TI6|1|A|A|2452
9TI6|1|A|A|2453
9TI6|1|A|C|2454
9TI6|1|A|G|2455
9TI6|1|A|G|2456
9TI6|1|A|A|2457
9TI6|1|A|U|2458
9TI6|1|A|A|2459
9TI6|1|A|A|2460
9TI6|1|A|A|2461
9TI6|1|A|A|2462

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 1: 50S ribosomal protein L28
Chain 6: Large ribosomal subunit protein bL33A
Chain 8: 50S ribosomal protein L35
Chain D: Transfer RNA; tRNA
Chain G: 50S ribosomal protein L2
Chain O: 50S ribosomal protein L15
Chain Z: 50S ribosomal protein L27

J6_9TI6_002