J6_9TKP_001

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9TKP|1|D2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|G|45
9TKP|1|D2|G|46
*
9TKP|1|D2|C|179
9TKP|1|D2|G|180
9TKP|1|D2|A|181
9TKP|1|D2|A|182
9TKP|1|D2|C|183
*
9TKP|1|D2|G|214
9TKP|1|D2|G|215
9TKP|1|D2|A|216
9TKP|1|D2|A|217
9TKP|1|D2|A|218
9TKP|1|D2|A|219
9TKP|1|D2|G|220
9TKP|1|D2|A|221
9TKP|1|D2|A|222
9TKP|1|D2|A|223
9TKP|1|D2|U|224
*
9TKP|1|D2|A|231
9TKP|1|D2|G|232
9TKP|1|D2|A|233
9TKP|1|D2|U|234
9TKP|1|D2|U|235
*
9TKP|1|D2|A|262
9TKP|1|D2|G|263
9TKP|1|D2|C|264
9TKP|1|D2|A|265
9TKP|1|D2|G|266
*
9TKP|1|D2|C|426
9TKP|1|D2|U|427
9TKP|1|D2|A|428
9TKP|1|D2|A|429
9TKP|1|D2|A|430
9TKP|1|D2|U|431
9TKP|1|D2|A|432
9TKP|1|D2|C|433

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34