J6_9TKQ_001

3D structure

PDB id

9TKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex bound to compact IF2-GDP (70S IC-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9TKQ|1|D2|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKQ|1|D2|G|45
9TKQ|1|D2|G|46
*
9TKQ|1|D2|C|179
9TKQ|1|D2|G|180
9TKQ|1|D2|A|181
9TKQ|1|D2|A|182
9TKQ|1|D2|C|183
*
9TKQ|1|D2|G|214
9TKQ|1|D2|G|215
9TKQ|1|D2|A|216
9TKQ|1|D2|A|217
9TKQ|1|D2|A|218
9TKQ|1|D2|A|219
9TKQ|1|D2|G|220
9TKQ|1|D2|A|221
9TKQ|1|D2|A|222
9TKQ|1|D2|A|223
9TKQ|1|D2|U|224
*
9TKQ|1|D2|A|231
9TKQ|1|D2|G|232
9TKQ|1|D2|A|233
9TKQ|1|D2|U|234
9TKQ|1|D2|U|235
*
9TKQ|1|D2|A|262
9TKQ|1|D2|G|263
9TKQ|1|D2|C|264
9TKQ|1|D2|A|265
9TKQ|1|D2|G|266
*
9TKQ|1|D2|C|426
9TKQ|1|D2|U|427
9TKQ|1|D2|A|428
9TKQ|1|D2|A|429
9TKQ|1|D2|A|430
9TKQ|1|D2|U|431
9TKQ|1|D2|A|432
9TKQ|1|D2|C|433

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34