J6_9TT7_002
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9TT7|1|L5|G|3908, 9TT7|1|L5|C|4323, 9TT7|1|L5|A|4362, 9TT7|1|L5|A|4364, 9TT7|1|L5|A|4365
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TT7|1|L5|PSU|3906
9TT7|1|L5|U|3907
9TT7|1|L5|G|3908
9TT7|1|L5|A|3909
*
9TT7|1|L5|U|4174
9TT7|1|L5|U|4175
9TT7|1|L5|U|4176
9TT7|1|L5|G|4177
*
9TT7|1|L5|C|4190
9TT7|1|L5|A|4191
*
9TT7|1|L5|OMU|4213
9TT7|1|L5|OMG|4214
9TT7|1|L5|U|4215
9TT7|1|L5|C|4216
*
9TT7|1|L5|G|4317
9TT7|1|L5|C|4318
9TT7|1|L5|C|4319
9TT7|1|L5|U|4320
9TT7|1|L5|C|4321
9TT7|1|L5|A|4322
9TT7|1|L5|C|4323
9TT7|1|L5|G|4324
9TT7|1|L5|A|4325
9TT7|1|L5|U|4326
9TT7|1|L5|C|4327
9TT7|1|L5|C|4328
*
9TT7|1|L5|OMG|4356
9TT7|1|L5|G|4357
9TT7|1|L5|U|4358
9TT7|1|L5|G|4359
9TT7|1|L5|U|4360
9TT7|1|L5|C|4361
9TT7|1|L5|A|4362
9TT7|1|L5|G|4363
9TT7|1|L5|A|4364
9TT7|1|L5|A|4365
9TT7|1|L5|A|4366
9TT7|1|L5|A|4367
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
- Chain S6
- E-site tRNA
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