Loop J6_9TV2

3D structure

PDB id: 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.1 Å

Loop

Sequence: (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length: 38 nucleotides
Bulged bases: 9TV2|1|L5|G|3908, 9TV2|1|L5|C|4323, 9TV2|1|L5|A|4362, 9TV2|1|L5|A|4364, 9TV2|1|L5|A|4365
QA status: Modified nucleotides: PSU, OMU, OMG

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9TV2|1|L5|PSU|3906
9TV2|1|L5|U|3907
9TV2|1|L5|G|3908
9TV2|1|L5|A|3909
*
9TV2|1|L5|U|4174
9TV2|1|L5|U|4175
9TV2|1|L5|U|4176
9TV2|1|L5|G|4177
*
9TV2|1|L5|C|4190
9TV2|1|L5|A|4191
*
9TV2|1|L5|OMU|4213
9TV2|1|L5|OMG|4214
9TV2|1|L5|U|4215
9TV2|1|L5|C|4216
*
9TV2|1|L5|G|4317
9TV2|1|L5|C|4318
9TV2|1|L5|C|4319
9TV2|1|L5|U|4320
9TV2|1|L5|C|4321
9TV2|1|L5|A|4322
9TV2|1|L5|C|4323
9TV2|1|L5|G|4324
9TV2|1|L5|A|4325
9TV2|1|L5|U|4326
9TV2|1|L5|C|4327
9TV2|1|L5|C|4328
*
9TV2|1|L5|OMG|4356
9TV2|1|L5|G|4357
9TV2|1|L5|U|4358
9TV2|1|L5|G|4359
9TV2|1|L5|U|4360
9TV2|1|L5|C|4361
9TV2|1|L5|A|4362
9TV2|1|L5|G|4363
9TV2|1|L5|A|4364
9TV2|1|L5|A|4365
9TV2|1|L5|A|4366
9TV2|1|L5|A|4367

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LN: 60S ribosomal protein L15
Chain LQ: 60S ribosomal protein L18
Chain LT: 60S ribosomal protein L21
Chain La: Large ribosomal subunit protein uL15
Chain Lb: 60S ribosomal protein L29
Chain Lo: 60S ribosomal protein L36a
Chain S6: E-site tRNA

J6_9TV2_002