J6_9VVI_001

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9VVI|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VVI|1|a|G|45
9VVI|1|a|G|46
*
9VVI|1|a|C|179
9VVI|1|a|G|180
9VVI|1|a|A|181
9VVI|1|a|A|182
9VVI|1|a|C|183
*
9VVI|1|a|G|214
9VVI|1|a|G|215
9VVI|1|a|A|216
9VVI|1|a|A|217
9VVI|1|a|A|218
9VVI|1|a|A|219
9VVI|1|a|G|220
9VVI|1|a|A|221
9VVI|1|a|A|222
9VVI|1|a|A|223
9VVI|1|a|U|224
*
9VVI|1|a|A|231
9VVI|1|a|G|232
9VVI|1|a|A|233
9VVI|1|a|U|234
9VVI|1|a|U|235
*
9VVI|1|a|A|262
9VVI|1|a|G|263
9VVI|1|a|C|264
9VVI|1|a|A|265
9VVI|1|a|G|266
*
9VVI|1|a|C|426
9VVI|1|a|U|427
9VVI|1|a|A|428
9VVI|1|a|A|429
9VVI|1|a|A|430
9VVI|1|a|U|431
9VVI|1|a|A|432
9VVI|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34