Loop J6_9VVI

3D structure

PDB id: 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of SecM-arrested 70S ribosome with YheS
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 9VVI|1|a|U|2076, 9VVI|1|a|A|2388, 9VVI|1|a|U|2390, 9VVI|1|a|G|2428, 9VVI|1|a|A|2430, 9VVI|1|a|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9VVI|1|a|U|2074
9VVI|1|a|U|2075
9VVI|1|a|U|2076
9VVI|1|a|A|2077
*
9VVI|1|a|U|2243
9VVI|1|a|U|2244
9VVI|1|a|U|2245
9VVI|1|a|G|2246
*
9VVI|1|a|C|2258
9VVI|1|a|U|2259
*
9VVI|1|a|A|2281
9VVI|1|a|G|2282
9VVI|1|a|C|2283
9VVI|1|a|A|2284
*
9VVI|1|a|U|2384
9VVI|1|a|C|2385
9VVI|1|a|A|2386
9VVI|1|a|U|2387
9VVI|1|a|A|2388
9VVI|1|a|G|2389
9VVI|1|a|U|2390
9VVI|1|a|G|2391
9VVI|1|a|A|2392
9VVI|1|a|U|2393
9VVI|1|a|C|2394
9VVI|1|a|C|2395
*
9VVI|1|a|G|2421
9VVI|1|a|C|2422
9VVI|1|a|U|2423
9VVI|1|a|C|2424
9VVI|1|a|A|2425
9VVI|1|a|A|2426
9VVI|1|a|C|2427
9VVI|1|a|G|2428
9VVI|1|a|G|2429
9VVI|1|a|A|2430
9VVI|1|a|U|2431
9VVI|1|a|A|2432
9VVI|1|a|A|2433
9VVI|1|a|A|2434
9VVI|1|a|A|2435

Current chains

Chain a: 23S rRNA

Nearby chains

Chain 0: Large ribosomal subunit protein bL33
Chain 2: Large ribosomal subunit protein bL35
Chain W: Probable ATP-binding protein YheS
Chain c: Large ribosomal subunit protein uL2
Chain k: 50S ribosomal protein L15
Chain v: Large ribosomal subunit protein bL27
Chain w: Large ribosomal subunit protein bL28

J6_9VVI_002