Loop J6_9VXM

3D structure

PDB id: 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
Length: 39 nucleotides
Bulged bases: 9VXM|1|A|U|2739, 9VXM|1|A|U|2895, 9VXM|1|A|G|2916, 9VXM|1|A|A|2918
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9VXM|1|A|U|2737
9VXM|1|A|U|2738
9VXM|1|A|U|2739
9VXM|1|A|A|2740
*
9VXM|1|A|U|2807
9VXM|1|A|U|2808
9VXM|1|A|C|2809
9VXM|1|A|G|2810
*
9VXM|1|A|C|2822
9VXM|1|A|U|2823
*
9VXM|1|A|A|2845
9VXM|1|A|G|2846
9VXM|1|A|C|2847
9VXM|1|A|A|2848
*
9VXM|1|A|U|2890
9VXM|1|A|C|2891
9VXM|1|A|A|2892
9VXM|1|A|A|2893
9VXM|1|A|U|2894
9VXM|1|A|U|2895
9VXM|1|A|G|2896
9VXM|1|A|A|2897
9VXM|1|A|U|2898
9VXM|1|A|C|2899
9VXM|1|A|C|2900
*
9VXM|1|A|G|2909
9VXM|1|A|A|2910
9VXM|1|A|C|2911
9VXM|1|A|C|2912
9VXM|1|A|A|2913
9VXM|1|A|A|2914
9VXM|1|A|C|2915
9VXM|1|A|G|2916
9VXM|1|A|G|2917
9VXM|1|A|A|2918
9VXM|1|A|A|2919
9VXM|1|A|C|2920
9VXM|1|A|A|2921
9VXM|1|A|A|2922

Current chains

Chain A: 16S mitochondrial rRNA

Nearby chains

Chain 1: Large ribosomal subunit protein bL33m
Chain 3: Large ribosomal subunit protein bL35m
Chain D: Large ribosomal subunit protein uL2m
Chain M: Large ribosomal subunit protein uL15m
Chain W: Large ribosomal subunit protein bL27m
Chain X: Large ribosomal subunit protein bL28m

J6_9VXM_002