J6_9WW4_002
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 9WW4|1|AA|C|1501, 9WW4|1|AA|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J6_9WW4_002 not in the Motif Atlas
- Homologous match to J6_8GLP_002
- Geometric discrepancy: 0.0943
- The information below is about J6_8GLP_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|AA|C|1352
9WW4|1|AA|G|1353
9WW4|1|AA|A|1354
9WW4|1|AA|G|1355
*
9WW4|1|AA|C|1384
9WW4|1|AA|G|1385
9WW4|1|AA|C|1386
9WW4|1|AA|A|1387
9WW4|1|AA|A|1388
*
9WW4|1|AA|U|1395
9WW4|1|AA|G|1396
9WW4|1|AA|A|1397
9WW4|1|AA|A|1398
9WW4|1|AA|G|1399
*
9WW4|1|AA|C|1418
9WW4|1|AA|G|1419
9WW4|1|AA|A|1420
9WW4|1|AA|G|1421
*
9WW4|1|AA|C|1464
9WW4|1|AA|G|1465
9WW4|1|AA|G|1466
*
9WW4|1|AA|C|1499
9WW4|1|AA|A|1500
9WW4|1|AA|C|1501
9WW4|1|AA|G|1502
9WW4|1|AA|A|1503
9WW4|1|AA|G|1504
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AF
- Large ribosomal subunit protein uL4
- Chain AN
- 60S ribosomal protein L13
- Chain AS
- 60S ribosomal protein L18
- Chain Ac
- Large ribosomal subunit protein uL15
- Chain Ad
- 60S ribosomal protein L29
- Chain Ak
- 60S ribosomal protein L36
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