J6_9WW6_003
3D structure
- PDB id
- 9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome delta eL41 non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUUACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9WW6|1|AA|G|3922, 9WW6|1|AA|C|4337, 9WW6|1|AA|A|4376, 9WW6|1|AA|A|4378, 9WW6|1|AA|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW6|1|AA|PSU|3920
9WW6|1|AA|U|3921
9WW6|1|AA|G|3922
9WW6|1|AA|A|3923
*
9WW6|1|AA|U|4188
9WW6|1|AA|U|4189
9WW6|1|AA|U|4190
9WW6|1|AA|G|4191
*
9WW6|1|AA|C|4204
9WW6|1|AA|A|4205
*
9WW6|1|AA|OMU|4227
9WW6|1|AA|OMG|4228
9WW6|1|AA|U|4229
9WW6|1|AA|C|4230
*
9WW6|1|AA|G|4331
9WW6|1|AA|C|4332
9WW6|1|AA|C|4333
9WW6|1|AA|U|4334
9WW6|1|AA|U|4335
9WW6|1|AA|A|4336
9WW6|1|AA|C|4337
9WW6|1|AA|G|4338
9WW6|1|AA|A|4339
9WW6|1|AA|U|4340
9WW6|1|AA|C|4341
9WW6|1|AA|C|4342
*
9WW6|1|AA|OMG|4370
9WW6|1|AA|G|4371
9WW6|1|AA|U|4372
9WW6|1|AA|G|4373
9WW6|1|AA|U|4374
9WW6|1|AA|C|4375
9WW6|1|AA|A|4376
9WW6|1|AA|G|4377
9WW6|1|AA|A|4378
9WW6|1|AA|A|4379
9WW6|1|AA|A|4380
9WW6|1|AA|A|4381
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AD
- 60S ribosomal protein L8
- Chain AP
- 60S ribosomal protein L15
- Chain AS
- 60S ribosomal protein L18
- Chain AV
- 60S ribosomal protein L21
- Chain Ac
- Large ribosomal subunit protein uL15
- Chain Ad
- 60S ribosomal protein L29
- Chain Aq
- 60S ribosomal protein L36a
Coloring options: