J6_9XFK_001

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9XFK|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|G|45
9XFK|1|I|G|46
*
9XFK|1|I|C|179
9XFK|1|I|G|180
9XFK|1|I|A|181
9XFK|1|I|A|182
9XFK|1|I|C|183
*
9XFK|1|I|G|214
9XFK|1|I|G|215
9XFK|1|I|A|216
9XFK|1|I|A|217
9XFK|1|I|A|218
9XFK|1|I|A|219
9XFK|1|I|G|220
9XFK|1|I|A|221
9XFK|1|I|A|222
9XFK|1|I|A|223
9XFK|1|I|U|224
*
9XFK|1|I|A|231
9XFK|1|I|G|232
9XFK|1|I|A|233
9XFK|1|I|U|234
9XFK|1|I|U|235
*
9XFK|1|I|A|262
9XFK|1|I|G|263
9XFK|1|I|C|264
9XFK|1|I|A|265
9XFK|1|I|G|266
*
9XFK|1|I|C|426
9XFK|1|I|U|427
9XFK|1|I|A|428
9XFK|1|I|A|429
9XFK|1|I|A|430
9XFK|1|I|U|431
9XFK|1|I|A|432
9XFK|1|I|C|433

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34