J6_9XFK_002
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 9XFK|1|I|U|2076, 9XFK|1|I|A|2388, 9XFK|1|I|U|2390, 9XFK|1|I|G|2428, 9XFK|1|I|A|2430, 9XFK|1|I|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9XFK|1|I|U|2074
9XFK|1|I|U|2075
9XFK|1|I|U|2076
9XFK|1|I|A|2077
*
9XFK|1|I|U|2243
9XFK|1|I|U|2244
9XFK|1|I|U|2245
9XFK|1|I|G|2246
*
9XFK|1|I|C|2258
9XFK|1|I|U|2259
*
9XFK|1|I|A|2281
9XFK|1|I|G|2282
9XFK|1|I|C|2283
9XFK|1|I|A|2284
*
9XFK|1|I|U|2384
9XFK|1|I|C|2385
9XFK|1|I|A|2386
9XFK|1|I|U|2387
9XFK|1|I|A|2388
9XFK|1|I|G|2389
9XFK|1|I|U|2390
9XFK|1|I|G|2391
9XFK|1|I|A|2392
9XFK|1|I|U|2393
9XFK|1|I|C|2394
9XFK|1|I|C|2395
*
9XFK|1|I|G|2421
9XFK|1|I|C|2422
9XFK|1|I|U|2423
9XFK|1|I|C|2424
9XFK|1|I|A|2425
9XFK|1|I|A|2426
9XFK|1|I|C|2427
9XFK|1|I|G|2428
9XFK|1|I|G|2429
9XFK|1|I|A|2430
9XFK|1|I|U|2431
9XFK|1|I|A|2432
9XFK|1|I|A|2433
9XFK|1|I|A|2434
9XFK|1|I|A|2435
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL2
- Chain T
- 50S ribosomal protein L15
- Chain e
- 50S ribosomal protein L27
- Chain f
- 50S ribosomal protein L28
- Chain j
- 50S ribosomal protein L33
- Chain l
- 50S ribosomal protein L35
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