J6_9XWO_001

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

9XWO|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|a|G|45
9XWO|1|a|G|46
*
9XWO|1|a|C|179
9XWO|1|a|G|180
9XWO|1|a|A|181
9XWO|1|a|A|182
9XWO|1|a|C|183
*
9XWO|1|a|G|214
9XWO|1|a|G|215
9XWO|1|a|A|216
9XWO|1|a|A|217
9XWO|1|a|A|218
9XWO|1|a|A|219
9XWO|1|a|G|220
9XWO|1|a|A|221
9XWO|1|a|A|222
9XWO|1|a|A|223
9XWO|1|a|U|224
*
9XWO|1|a|A|231
9XWO|1|a|G|232
9XWO|1|a|A|233
9XWO|1|a|U|234
9XWO|1|a|U|235
*
9XWO|1|a|A|262
9XWO|1|a|G|263
9XWO|1|a|C|264
9XWO|1|a|A|265
9XWO|1|a|G|266
*
9XWO|1|a|C|426
9XWO|1|a|U|427
9XWO|1|a|A|428
9XWO|1|a|A|429
9XWO|1|a|A|430
9XWO|1|a|U|431
9XWO|1|a|A|432
9XWO|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34