J6_9Y49_003
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9Y49|1|A6|G|3922, 9Y49|1|A6|A|4376, 9Y49|1|A6|A|4378, 9Y49|1|A6|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y49|1|A6|U|3920
9Y49|1|A6|U|3921
9Y49|1|A6|G|3922
9Y49|1|A6|A|3923
*
9Y49|1|A6|U|4188
9Y49|1|A6|U|4189
9Y49|1|A6|U|4190
9Y49|1|A6|G|4191
*
9Y49|1|A6|C|4204
9Y49|1|A6|A|4205
*
9Y49|1|A6|U|4227
9Y49|1|A6|G|4228
9Y49|1|A6|U|4229
9Y49|1|A6|C|4230
*
9Y49|1|A6|G|4331
9Y49|1|A6|C|4332
9Y49|1|A6|C|4333
9Y49|1|A6|U|4334
9Y49|1|A6|C|4335
9Y49|1|A6|A|4336
9Y49|1|A6|C|4337
9Y49|1|A6|G|4338
9Y49|1|A6|A|4339
9Y49|1|A6|U|4340
9Y49|1|A6|C|4341
9Y49|1|A6|C|4342
*
9Y49|1|A6|G|4370
9Y49|1|A6|G|4371
9Y49|1|A6|U|4372
9Y49|1|A6|G|4373
9Y49|1|A6|U|4374
9Y49|1|A6|C|4375
9Y49|1|A6|A|4376
9Y49|1|A6|G|4377
9Y49|1|A6|A|4378
9Y49|1|A6|A|4379
9Y49|1|A6|A|4380
9Y49|1|A6|A|4381
Current chains
- Chain A6
- LSU-beta rRNA (2069-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- 60S ribosomal protein L8
- Chain CN
- 60S ribosomal protein L15
- Chain CQ
- 60S ribosomal protein L18
- Chain CT
- 60S ribosomal protein L21
- Chain Ca
- 60S ribosomal protein L27a
- Chain Cb
- 60S ribosomal protein L29
- Chain Co
- 60S ribosomal protein L36a
- Chain tR
- Transfer RNA; tRNA
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