Loop J6_9YDC

3D structure

PDB id: 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 9YDC|1|A|A|67, 9YDC|1|A|U|329, 9YDC|1|C|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9YDC|1|A|G|22
9YDC|1|A|A|23
9YDC|1|A|G|24
9YDC|1|A|U|25
9YDC|1|A|A|26
9YDC|1|A|C|27
*
9YDC|1|A|G|58
9YDC|1|A|G|59
9YDC|1|A|A|60
9YDC|1|A|A|61
9YDC|1|A|A|62
9YDC|1|A|A|63
9YDC|1|A|G|64
9YDC|1|A|A|65
9YDC|1|A|A|66
9YDC|1|A|A|67
9YDC|1|A|C|68
*
9YDC|1|A|G|75
9YDC|1|A|G|76
9YDC|1|A|A|77
9YDC|1|A|U|78
9YDC|1|A|U|79
*
9YDC|1|A|A|106
9YDC|1|A|A|107
9YDC|1|A|A|108
9YDC|1|A|A|109
9YDC|1|A|G|110
*
9YDC|1|A|C|321
9YDC|1|A|U|322
9YDC|1|A|A|323
9YDC|1|A|A|324
9YDC|1|A|A|325
9YDC|1|A|U|326
9YDC|1|A|A|327
9YDC|1|A|U|328
9YDC|1|A|U|329
9YDC|1|A|G|330
9YDC|1|A|G|331
*
9YDC|1|C|C|32
9YDC|1|C|A|33
9YDC|1|C|U|34
9YDC|1|C|C|35

Current chains

Chain A: 25S RNA
Chain C: 8S RNA

Nearby chains

Chain LF: 60S ribosomal protein L4-A
Chain LN: 60S ribosomal protein L13-A
Chain LP: 60S ribosomal protein L15-A
Chain Lj: 60S ribosomal protein L35-A
Chain Lk: 60S ribosomal protein L36-A
Chain Ll: 60S ribosomal protein L37-A

J6_9YDC_001