J6_9YDD_001

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

9YDD|1|A|A|67, 9YDD|1|A|U|329, 9YDD|1|C|U|34

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDD|1|A|G|22
9YDD|1|A|A|23
9YDD|1|A|G|24
9YDD|1|A|U|25
9YDD|1|A|A|26
9YDD|1|A|C|27
*
9YDD|1|A|G|58
9YDD|1|A|G|59
9YDD|1|A|A|60
9YDD|1|A|A|61
9YDD|1|A|A|62
9YDD|1|A|A|63
9YDD|1|A|G|64
9YDD|1|A|A|65
9YDD|1|A|A|66
9YDD|1|A|A|67
9YDD|1|A|C|68
*
9YDD|1|A|G|75
9YDD|1|A|G|76
9YDD|1|A|A|77
9YDD|1|A|U|78
9YDD|1|A|U|79
*
9YDD|1|A|A|106
9YDD|1|A|A|107
9YDD|1|A|A|108
9YDD|1|A|A|109
9YDD|1|A|G|110
*
9YDD|1|A|C|321
9YDD|1|A|U|322
9YDD|1|A|A|323
9YDD|1|A|A|324
9YDD|1|A|A|325
9YDD|1|A|U|326
9YDD|1|A|A|327
9YDD|1|A|U|328
9YDD|1|A|U|329
9YDD|1|A|G|330
9YDD|1|A|G|331
*
9YDD|1|C|C|32
9YDD|1|C|A|33
9YDD|1|C|U|34
9YDD|1|C|C|35

Current chains

Chain A

25S RNA

Chain C

8S RNA

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain LN

60S ribosomal protein L13-A

Chain LP

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L35-A

Chain Lk

60S ribosomal protein L36-A

Chain Ll

60S ribosomal protein L37-A