Loop J6_9YDE

3D structure

PDB id: 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.82 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 9YDE|1|A|A|67, 9YDE|1|A|U|329, 9YDE|1|C|U|34
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9YDE|1|A|G|22
9YDE|1|A|A|23
9YDE|1|A|G|24
9YDE|1|A|U|25
9YDE|1|A|A|26
9YDE|1|A|C|27
*
9YDE|1|A|G|58
9YDE|1|A|G|59
9YDE|1|A|A|60
9YDE|1|A|A|61
9YDE|1|A|A|62
9YDE|1|A|A|63
9YDE|1|A|G|64
9YDE|1|A|A|65
9YDE|1|A|A|66
9YDE|1|A|A|67
9YDE|1|A|C|68
*
9YDE|1|A|G|75
9YDE|1|A|G|76
9YDE|1|A|A|77
9YDE|1|A|U|78
9YDE|1|A|U|79
*
9YDE|1|A|A|106
9YDE|1|A|A|107
9YDE|1|A|A|108
9YDE|1|A|A|109
9YDE|1|A|G|110
*
9YDE|1|A|C|321
9YDE|1|A|U|322
9YDE|1|A|A|323
9YDE|1|A|A|324
9YDE|1|A|A|325
9YDE|1|A|U|326
9YDE|1|A|A|327
9YDE|1|A|U|328
9YDE|1|A|U|329
9YDE|1|A|G|330
9YDE|1|A|G|331
*
9YDE|1|C|C|32
9YDE|1|C|A|33
9YDE|1|C|U|34
9YDE|1|C|C|35

Current chains

Chain A: 25S RNA
Chain C: 8S RNA

Nearby chains

Chain LF: 60S ribosomal protein L4-A
Chain LN: 60S ribosomal protein L13-A
Chain LP: 60S ribosomal protein L15-A
Chain Lj: 60S ribosomal protein L35-A
Chain Lk: 60S ribosomal protein L36-A
Chain Ll: 60S ribosomal protein L37-A

J6_9YDE_001