J6_9YPZ_003
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 9YPZ|1|5|G|3922, 9YPZ|1|5|A|4376, 9YPZ|1|5|A|4378, 9YPZ|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|5|U|3920
9YPZ|1|5|U|3921
9YPZ|1|5|G|3922
9YPZ|1|5|A|3923
*
9YPZ|1|5|U|4188
9YPZ|1|5|U|4189
9YPZ|1|5|U|4190
9YPZ|1|5|G|4191
*
9YPZ|1|5|C|4204
9YPZ|1|5|A|4205
*
9YPZ|1|5|U|4227
9YPZ|1|5|G|4228
9YPZ|1|5|U|4229
9YPZ|1|5|C|4230
*
9YPZ|1|5|G|4331
9YPZ|1|5|C|4332
9YPZ|1|5|C|4333
9YPZ|1|5|U|4334
9YPZ|1|5|C|4335
9YPZ|1|5|A|4336
9YPZ|1|5|C|4337
9YPZ|1|5|G|4338
9YPZ|1|5|A|4339
9YPZ|1|5|U|4340
9YPZ|1|5|C|4341
9YPZ|1|5|C|4342
*
9YPZ|1|5|G|4370
9YPZ|1|5|G|4371
9YPZ|1|5|U|4372
9YPZ|1|5|G|4373
9YPZ|1|5|U|4374
9YPZ|1|5|C|4375
9YPZ|1|5|A|4376
9YPZ|1|5|G|4377
9YPZ|1|5|A|4378
9YPZ|1|5|A|4379
9YPZ|1|5|A|4380
9YPZ|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 11
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- Large ribosomal subunit protein eL42
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