J6_9ZDV_001

3D structure

PDB id

9ZDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 51

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZDV|1|A|U|52, 9ZDV|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZDV|1|A|C|21
9ZDV|1|A|G|22
9ZDV|1|A|C|23
*
9ZDV|1|A|G|44
9ZDV|1|A|A|45
9ZDV|1|A|G|46
9ZDV|1|A|G|47
9ZDV|1|A|A|48
9ZDV|1|A|A|49
9ZDV|1|A|A|50
9ZDV|1|A|G|51
9ZDV|1|A|U|52
9ZDV|1|A|C|53
9ZDV|1|A|C|54
9ZDV|1|A|A|55
9ZDV|1|A|U|56
9ZDV|1|A|G|57
9ZDV|1|A|C|58
*
9ZDV|1|A|G|254
9ZDV|1|A|A|255
9ZDV|1|A|A|256
9ZDV|1|A|A|257
9ZDV|1|A|C|258
*
9ZDV|1|A|G|274
9ZDV|1|A|G|275
9ZDV|1|A|C|276
9ZDV|1|A|A|277
9ZDV|1|A|C|278
*
9ZDV|1|A|G|307
9ZDV|1|A|A|308
*
9ZDV|1|A|U|329
9ZDV|1|A|A|330
9ZDV|1|A|G|331
9ZDV|1|A|A|332
9ZDV|1|A|U|333
9ZDV|1|A|A|334
9ZDV|1|A|G|335
9ZDV|1|A|A|336
9ZDV|1|A|U|337
9ZDV|1|A|G|338

Current chains

Chain A

RNase P RNA

Nearby chains