J6_9ZF3_001

3D structure

PDB id

9ZF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 48

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9ZF3|1|A|U|52, 9ZF3|1|A|A|256, 9ZF3|1|A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZF3|1|A|C|21
9ZF3|1|A|G|22
9ZF3|1|A|C|23
*
9ZF3|1|A|G|44
9ZF3|1|A|A|45
9ZF3|1|A|G|46
9ZF3|1|A|G|47
9ZF3|1|A|A|48
9ZF3|1|A|A|49
9ZF3|1|A|A|50
9ZF3|1|A|G|51
9ZF3|1|A|U|52
9ZF3|1|A|C|53
9ZF3|1|A|C|54
9ZF3|1|A|A|55
9ZF3|1|A|U|56
9ZF3|1|A|G|57
9ZF3|1|A|C|58
*
9ZF3|1|A|G|254
9ZF3|1|A|A|255
9ZF3|1|A|A|256
9ZF3|1|A|A|257
9ZF3|1|A|C|258
*
9ZF3|1|A|G|274
9ZF3|1|A|G|275
9ZF3|1|A|C|276
9ZF3|1|A|A|277
9ZF3|1|A|C|278
*
9ZF3|1|A|G|307
9ZF3|1|A|A|308
9ZF3|1|A|C|309
*
9ZF3|1|A|G|328
9ZF3|1|A|U|329
9ZF3|1|A|A|330
9ZF3|1|A|G|331
9ZF3|1|A|A|332
9ZF3|1|A|U|333
9ZF3|1|A|A|334
9ZF3|1|A|G|335
9ZF3|1|A|A|336
9ZF3|1|A|U|337
9ZF3|1|A|G|338

Current chains

Chain A

RNase P RNA

Nearby chains