J6_9ZF9_001

3D structure

PDB id

9ZF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 55

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9ZF9|1|A|U|52, 9ZF9|1|A|A|256, 9ZF9|1|A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZF9|1|A|C|21
9ZF9|1|A|G|22
9ZF9|1|A|C|23
*
9ZF9|1|A|G|44
9ZF9|1|A|A|45
9ZF9|1|A|G|46
9ZF9|1|A|G|47
9ZF9|1|A|A|48
9ZF9|1|A|A|49
9ZF9|1|A|A|50
9ZF9|1|A|G|51
9ZF9|1|A|U|52
9ZF9|1|A|C|53
9ZF9|1|A|C|54
9ZF9|1|A|A|55
9ZF9|1|A|U|56
9ZF9|1|A|G|57
9ZF9|1|A|C|58
*
9ZF9|1|A|G|254
9ZF9|1|A|A|255
9ZF9|1|A|A|256
9ZF9|1|A|A|257
9ZF9|1|A|C|258
*
9ZF9|1|A|G|274
9ZF9|1|A|G|275
9ZF9|1|A|C|276
9ZF9|1|A|A|277
9ZF9|1|A|C|278
*
9ZF9|1|A|G|307
9ZF9|1|A|A|308
9ZF9|1|A|C|309
*
9ZF9|1|A|G|328
9ZF9|1|A|U|329
9ZF9|1|A|A|330
9ZF9|1|A|G|331
9ZF9|1|A|A|332
9ZF9|1|A|U|333
9ZF9|1|A|A|334
9ZF9|1|A|G|335
9ZF9|1|A|A|336
9ZF9|1|A|U|337
9ZF9|1|A|G|338

Current chains

Chain A

RNase P RNA

Nearby chains