J6_9ZFD_001

3D structure

PDB id

9ZFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9ZFD|1|A|U|52, 9ZFD|1|A|A|256, 9ZFD|1|A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZFD|1|A|C|21
9ZFD|1|A|G|22
9ZFD|1|A|C|23
*
9ZFD|1|A|G|44
9ZFD|1|A|A|45
9ZFD|1|A|G|46
9ZFD|1|A|G|47
9ZFD|1|A|A|48
9ZFD|1|A|A|49
9ZFD|1|A|A|50
9ZFD|1|A|G|51
9ZFD|1|A|U|52
9ZFD|1|A|C|53
9ZFD|1|A|C|54
9ZFD|1|A|A|55
9ZFD|1|A|U|56
9ZFD|1|A|G|57
9ZFD|1|A|C|58
*
9ZFD|1|A|G|254
9ZFD|1|A|A|255
9ZFD|1|A|A|256
9ZFD|1|A|A|257
9ZFD|1|A|C|258
*
9ZFD|1|A|G|274
9ZFD|1|A|G|275
9ZFD|1|A|C|276
9ZFD|1|A|A|277
9ZFD|1|A|C|278
*
9ZFD|1|A|G|307
9ZFD|1|A|A|308
9ZFD|1|A|C|309
*
9ZFD|1|A|G|328
9ZFD|1|A|U|329
9ZFD|1|A|A|330
9ZFD|1|A|G|331
9ZFD|1|A|A|332
9ZFD|1|A|U|333
9ZFD|1|A|A|334
9ZFD|1|A|G|335
9ZFD|1|A|A|336
9ZFD|1|A|U|337
9ZFD|1|A|G|338

Current chains

Chain A

RNase P RNA

Nearby chains