J6_9ZGM_001

3D structure

PDB id

9ZGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9ZGM|1|A|U|52, 9ZGM|1|A|A|256, 9ZGM|1|A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZGM|1|A|C|21
9ZGM|1|A|G|22
9ZGM|1|A|C|23
*
9ZGM|1|A|G|44
9ZGM|1|A|A|45
9ZGM|1|A|G|46
9ZGM|1|A|G|47
9ZGM|1|A|A|48
9ZGM|1|A|A|49
9ZGM|1|A|A|50
9ZGM|1|A|G|51
9ZGM|1|A|U|52
9ZGM|1|A|C|53
9ZGM|1|A|C|54
9ZGM|1|A|A|55
9ZGM|1|A|U|56
9ZGM|1|A|G|57
9ZGM|1|A|C|58
*
9ZGM|1|A|G|254
9ZGM|1|A|A|255
9ZGM|1|A|A|256
9ZGM|1|A|A|257
9ZGM|1|A|C|258
*
9ZGM|1|A|G|274
9ZGM|1|A|G|275
9ZGM|1|A|C|276
9ZGM|1|A|A|277
9ZGM|1|A|C|278
*
9ZGM|1|A|G|307
9ZGM|1|A|A|308
9ZGM|1|A|C|309
*
9ZGM|1|A|G|328
9ZGM|1|A|U|329
9ZGM|1|A|A|330
9ZGM|1|A|G|331
9ZGM|1|A|A|332
9ZGM|1|A|U|333
9ZGM|1|A|A|334
9ZGM|1|A|G|335
9ZGM|1|A|A|336
9ZGM|1|A|U|337
9ZGM|1|A|G|338

Current chains

Chain A

RNase P RNA

Nearby chains