J6_9ZHK_001

3D structure

PDB id

9ZHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 33

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GAC*GUAGAUAGAUG

Length

42 nucleotides

Bulged bases

9ZHK|1|A|U|52, 9ZHK|1|A|A|256, 9ZHK|1|A|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZHK|1|A|C|21
9ZHK|1|A|G|22
9ZHK|1|A|C|23
*
9ZHK|1|A|G|44
9ZHK|1|A|A|45
9ZHK|1|A|G|46
9ZHK|1|A|G|47
9ZHK|1|A|A|48
9ZHK|1|A|A|49
9ZHK|1|A|A|50
9ZHK|1|A|G|51
9ZHK|1|A|U|52
9ZHK|1|A|C|53
9ZHK|1|A|C|54
9ZHK|1|A|A|55
9ZHK|1|A|U|56
9ZHK|1|A|G|57
9ZHK|1|A|C|58
*
9ZHK|1|A|G|254
9ZHK|1|A|A|255
9ZHK|1|A|A|256
9ZHK|1|A|A|257
9ZHK|1|A|C|258
*
9ZHK|1|A|G|274
9ZHK|1|A|G|275
9ZHK|1|A|C|276
9ZHK|1|A|A|277
9ZHK|1|A|C|278
*
9ZHK|1|A|G|307
9ZHK|1|A|A|308
9ZHK|1|A|C|309
*
9ZHK|1|A|G|328
9ZHK|1|A|U|329
9ZHK|1|A|A|330
9ZHK|1|A|G|331
9ZHK|1|A|A|332
9ZHK|1|A|U|333
9ZHK|1|A|A|334
9ZHK|1|A|G|335
9ZHK|1|A|A|336
9ZHK|1|A|U|337
9ZHK|1|A|G|338

Current chains

Chain A

RNase P RNA

Nearby chains