J6_9ZI8_001

3D structure

PDB id

9ZI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZI8|1|A|U|52, 9ZI8|1|A|A|256, 9ZI8|1|A|A|334, 9ZI8|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZI8|1|A|C|21
9ZI8|1|A|G|22
9ZI8|1|A|C|23
*
9ZI8|1|A|G|44
9ZI8|1|A|A|45
9ZI8|1|A|G|46
9ZI8|1|A|G|47
9ZI8|1|A|A|48
9ZI8|1|A|A|49
9ZI8|1|A|A|50
9ZI8|1|A|G|51
9ZI8|1|A|U|52
9ZI8|1|A|C|53
9ZI8|1|A|C|54
9ZI8|1|A|A|55
9ZI8|1|A|U|56
9ZI8|1|A|G|57
9ZI8|1|A|C|58
*
9ZI8|1|A|G|254
9ZI8|1|A|A|255
9ZI8|1|A|A|256
9ZI8|1|A|A|257
9ZI8|1|A|C|258
*
9ZI8|1|A|G|274
9ZI8|1|A|G|275
9ZI8|1|A|C|276
9ZI8|1|A|A|277
9ZI8|1|A|C|278
*
9ZI8|1|A|G|307
9ZI8|1|A|A|308
*
9ZI8|1|A|U|329
9ZI8|1|A|A|330
9ZI8|1|A|G|331
9ZI8|1|A|A|332
9ZI8|1|A|U|333
9ZI8|1|A|A|334
9ZI8|1|A|G|335
9ZI8|1|A|A|336
9ZI8|1|A|U|337
9ZI8|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component