J6_9ZI9_001

3D structure

PDB id

9ZI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZI9|1|A|U|52, 9ZI9|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZI9|1|A|C|21
9ZI9|1|A|G|22
9ZI9|1|A|C|23
*
9ZI9|1|A|G|44
9ZI9|1|A|A|45
9ZI9|1|A|G|46
9ZI9|1|A|G|47
9ZI9|1|A|A|48
9ZI9|1|A|A|49
9ZI9|1|A|A|50
9ZI9|1|A|G|51
9ZI9|1|A|U|52
9ZI9|1|A|C|53
9ZI9|1|A|C|54
9ZI9|1|A|A|55
9ZI9|1|A|U|56
9ZI9|1|A|G|57
9ZI9|1|A|C|58
*
9ZI9|1|A|G|254
9ZI9|1|A|A|255
9ZI9|1|A|A|256
9ZI9|1|A|A|257
9ZI9|1|A|C|258
*
9ZI9|1|A|G|274
9ZI9|1|A|G|275
9ZI9|1|A|C|276
9ZI9|1|A|A|277
9ZI9|1|A|C|278
*
9ZI9|1|A|G|307
9ZI9|1|A|A|308
*
9ZI9|1|A|U|329
9ZI9|1|A|A|330
9ZI9|1|A|G|331
9ZI9|1|A|A|332
9ZI9|1|A|U|333
9ZI9|1|A|A|334
9ZI9|1|A|G|335
9ZI9|1|A|A|336
9ZI9|1|A|U|337
9ZI9|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component