J6_9ZIC_001

3D structure

PDB id

9ZIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIC|1|A|U|52, 9ZIC|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIC|1|A|C|21
9ZIC|1|A|G|22
9ZIC|1|A|C|23
*
9ZIC|1|A|G|44
9ZIC|1|A|A|45
9ZIC|1|A|G|46
9ZIC|1|A|G|47
9ZIC|1|A|A|48
9ZIC|1|A|A|49
9ZIC|1|A|A|50
9ZIC|1|A|G|51
9ZIC|1|A|U|52
9ZIC|1|A|C|53
9ZIC|1|A|C|54
9ZIC|1|A|A|55
9ZIC|1|A|U|56
9ZIC|1|A|G|57
9ZIC|1|A|C|58
*
9ZIC|1|A|G|254
9ZIC|1|A|A|255
9ZIC|1|A|A|256
9ZIC|1|A|A|257
9ZIC|1|A|C|258
*
9ZIC|1|A|G|274
9ZIC|1|A|G|275
9ZIC|1|A|C|276
9ZIC|1|A|A|277
9ZIC|1|A|C|278
*
9ZIC|1|A|G|307
9ZIC|1|A|A|308
*
9ZIC|1|A|U|329
9ZIC|1|A|A|330
9ZIC|1|A|G|331
9ZIC|1|A|A|332
9ZIC|1|A|U|333
9ZIC|1|A|A|334
9ZIC|1|A|G|335
9ZIC|1|A|A|336
9ZIC|1|A|U|337
9ZIC|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component