J6_9ZID_001

3D structure

PDB id

9ZID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZID|1|A|U|52, 9ZID|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZID|1|A|C|21
9ZID|1|A|G|22
9ZID|1|A|C|23
*
9ZID|1|A|G|44
9ZID|1|A|A|45
9ZID|1|A|G|46
9ZID|1|A|G|47
9ZID|1|A|A|48
9ZID|1|A|A|49
9ZID|1|A|A|50
9ZID|1|A|G|51
9ZID|1|A|U|52
9ZID|1|A|C|53
9ZID|1|A|C|54
9ZID|1|A|A|55
9ZID|1|A|U|56
9ZID|1|A|G|57
9ZID|1|A|C|58
*
9ZID|1|A|G|254
9ZID|1|A|A|255
9ZID|1|A|A|256
9ZID|1|A|A|257
9ZID|1|A|C|258
*
9ZID|1|A|G|274
9ZID|1|A|G|275
9ZID|1|A|C|276
9ZID|1|A|A|277
9ZID|1|A|C|278
*
9ZID|1|A|G|307
9ZID|1|A|A|308
*
9ZID|1|A|U|329
9ZID|1|A|A|330
9ZID|1|A|G|331
9ZID|1|A|A|332
9ZID|1|A|U|333
9ZID|1|A|A|334
9ZID|1|A|G|335
9ZID|1|A|A|336
9ZID|1|A|U|337
9ZID|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component