J6_9ZIF_001

3D structure

PDB id

9ZIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 7

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIF|1|A|U|52, 9ZIF|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIF|1|A|C|21
9ZIF|1|A|G|22
9ZIF|1|A|C|23
*
9ZIF|1|A|G|44
9ZIF|1|A|A|45
9ZIF|1|A|G|46
9ZIF|1|A|G|47
9ZIF|1|A|A|48
9ZIF|1|A|A|49
9ZIF|1|A|A|50
9ZIF|1|A|G|51
9ZIF|1|A|U|52
9ZIF|1|A|C|53
9ZIF|1|A|C|54
9ZIF|1|A|A|55
9ZIF|1|A|U|56
9ZIF|1|A|G|57
9ZIF|1|A|C|58
*
9ZIF|1|A|G|254
9ZIF|1|A|A|255
9ZIF|1|A|A|256
9ZIF|1|A|A|257
9ZIF|1|A|C|258
*
9ZIF|1|A|G|274
9ZIF|1|A|G|275
9ZIF|1|A|C|276
9ZIF|1|A|A|277
9ZIF|1|A|C|278
*
9ZIF|1|A|G|307
9ZIF|1|A|A|308
*
9ZIF|1|A|U|329
9ZIF|1|A|A|330
9ZIF|1|A|G|331
9ZIF|1|A|A|332
9ZIF|1|A|U|333
9ZIF|1|A|A|334
9ZIF|1|A|G|335
9ZIF|1|A|A|336
9ZIF|1|A|U|337
9ZIF|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component