J6_9ZIH_001

3D structure

PDB id

9ZIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 9

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIH|1|A|U|52, 9ZIH|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIH|1|A|C|21
9ZIH|1|A|G|22
9ZIH|1|A|C|23
*
9ZIH|1|A|G|44
9ZIH|1|A|A|45
9ZIH|1|A|G|46
9ZIH|1|A|G|47
9ZIH|1|A|A|48
9ZIH|1|A|A|49
9ZIH|1|A|A|50
9ZIH|1|A|G|51
9ZIH|1|A|U|52
9ZIH|1|A|C|53
9ZIH|1|A|C|54
9ZIH|1|A|A|55
9ZIH|1|A|U|56
9ZIH|1|A|G|57
9ZIH|1|A|C|58
*
9ZIH|1|A|G|254
9ZIH|1|A|A|255
9ZIH|1|A|A|256
9ZIH|1|A|A|257
9ZIH|1|A|C|258
*
9ZIH|1|A|G|274
9ZIH|1|A|G|275
9ZIH|1|A|C|276
9ZIH|1|A|A|277
9ZIH|1|A|C|278
*
9ZIH|1|A|G|307
9ZIH|1|A|A|308
*
9ZIH|1|A|U|329
9ZIH|1|A|A|330
9ZIH|1|A|G|331
9ZIH|1|A|A|332
9ZIH|1|A|U|333
9ZIH|1|A|A|334
9ZIH|1|A|G|335
9ZIH|1|A|A|336
9ZIH|1|A|U|337
9ZIH|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component