J6_9ZII_001

3D structure

PDB id

9ZII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 10

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZII|1|A|U|52, 9ZII|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZII|1|A|C|21
9ZII|1|A|G|22
9ZII|1|A|C|23
*
9ZII|1|A|G|44
9ZII|1|A|A|45
9ZII|1|A|G|46
9ZII|1|A|G|47
9ZII|1|A|A|48
9ZII|1|A|A|49
9ZII|1|A|A|50
9ZII|1|A|G|51
9ZII|1|A|U|52
9ZII|1|A|C|53
9ZII|1|A|C|54
9ZII|1|A|A|55
9ZII|1|A|U|56
9ZII|1|A|G|57
9ZII|1|A|C|58
*
9ZII|1|A|G|254
9ZII|1|A|A|255
9ZII|1|A|A|256
9ZII|1|A|A|257
9ZII|1|A|C|258
*
9ZII|1|A|G|274
9ZII|1|A|G|275
9ZII|1|A|C|276
9ZII|1|A|A|277
9ZII|1|A|C|278
*
9ZII|1|A|G|307
9ZII|1|A|A|308
*
9ZII|1|A|U|329
9ZII|1|A|A|330
9ZII|1|A|G|331
9ZII|1|A|A|332
9ZII|1|A|U|333
9ZII|1|A|A|334
9ZII|1|A|G|335
9ZII|1|A|A|336
9ZII|1|A|U|337
9ZII|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component