J6_9ZIJ_001

3D structure

PDB id

9ZIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 11

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIJ|1|A|U|52, 9ZIJ|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIJ|1|A|C|21
9ZIJ|1|A|G|22
9ZIJ|1|A|C|23
*
9ZIJ|1|A|G|44
9ZIJ|1|A|A|45
9ZIJ|1|A|G|46
9ZIJ|1|A|G|47
9ZIJ|1|A|A|48
9ZIJ|1|A|A|49
9ZIJ|1|A|A|50
9ZIJ|1|A|G|51
9ZIJ|1|A|U|52
9ZIJ|1|A|C|53
9ZIJ|1|A|C|54
9ZIJ|1|A|A|55
9ZIJ|1|A|U|56
9ZIJ|1|A|G|57
9ZIJ|1|A|C|58
*
9ZIJ|1|A|G|254
9ZIJ|1|A|A|255
9ZIJ|1|A|A|256
9ZIJ|1|A|A|257
9ZIJ|1|A|C|258
*
9ZIJ|1|A|G|274
9ZIJ|1|A|G|275
9ZIJ|1|A|C|276
9ZIJ|1|A|A|277
9ZIJ|1|A|C|278
*
9ZIJ|1|A|G|307
9ZIJ|1|A|A|308
*
9ZIJ|1|A|U|329
9ZIJ|1|A|A|330
9ZIJ|1|A|G|331
9ZIJ|1|A|A|332
9ZIJ|1|A|U|333
9ZIJ|1|A|A|334
9ZIJ|1|A|G|335
9ZIJ|1|A|A|336
9ZIJ|1|A|U|337
9ZIJ|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component