J6_9ZIK_001

3D structure

PDB id

9ZIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 12

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIK|1|A|U|52, 9ZIK|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIK|1|A|C|21
9ZIK|1|A|G|22
9ZIK|1|A|C|23
*
9ZIK|1|A|G|44
9ZIK|1|A|A|45
9ZIK|1|A|G|46
9ZIK|1|A|G|47
9ZIK|1|A|A|48
9ZIK|1|A|A|49
9ZIK|1|A|A|50
9ZIK|1|A|G|51
9ZIK|1|A|U|52
9ZIK|1|A|C|53
9ZIK|1|A|C|54
9ZIK|1|A|A|55
9ZIK|1|A|U|56
9ZIK|1|A|G|57
9ZIK|1|A|C|58
*
9ZIK|1|A|G|254
9ZIK|1|A|A|255
9ZIK|1|A|A|256
9ZIK|1|A|A|257
9ZIK|1|A|C|258
*
9ZIK|1|A|G|274
9ZIK|1|A|G|275
9ZIK|1|A|C|276
9ZIK|1|A|A|277
9ZIK|1|A|C|278
*
9ZIK|1|A|G|307
9ZIK|1|A|A|308
*
9ZIK|1|A|U|329
9ZIK|1|A|A|330
9ZIK|1|A|G|331
9ZIK|1|A|A|332
9ZIK|1|A|U|333
9ZIK|1|A|A|334
9ZIK|1|A|G|335
9ZIK|1|A|A|336
9ZIK|1|A|U|337
9ZIK|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component