J6_9ZIL_001

3D structure

PDB id

9ZIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 13

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIL|1|A|U|52, 9ZIL|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIL|1|A|C|21
9ZIL|1|A|G|22
9ZIL|1|A|C|23
*
9ZIL|1|A|G|44
9ZIL|1|A|A|45
9ZIL|1|A|G|46
9ZIL|1|A|G|47
9ZIL|1|A|A|48
9ZIL|1|A|A|49
9ZIL|1|A|A|50
9ZIL|1|A|G|51
9ZIL|1|A|U|52
9ZIL|1|A|C|53
9ZIL|1|A|C|54
9ZIL|1|A|A|55
9ZIL|1|A|U|56
9ZIL|1|A|G|57
9ZIL|1|A|C|58
*
9ZIL|1|A|G|254
9ZIL|1|A|A|255
9ZIL|1|A|A|256
9ZIL|1|A|A|257
9ZIL|1|A|C|258
*
9ZIL|1|A|G|274
9ZIL|1|A|G|275
9ZIL|1|A|C|276
9ZIL|1|A|A|277
9ZIL|1|A|C|278
*
9ZIL|1|A|G|307
9ZIL|1|A|A|308
*
9ZIL|1|A|U|329
9ZIL|1|A|A|330
9ZIL|1|A|G|331
9ZIL|1|A|A|332
9ZIL|1|A|U|333
9ZIL|1|A|A|334
9ZIL|1|A|G|335
9ZIL|1|A|A|336
9ZIL|1|A|U|337
9ZIL|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component