J6_9ZIM_001

3D structure

PDB id

9ZIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIM|1|A|U|52, 9ZIM|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIM|1|A|C|21
9ZIM|1|A|G|22
9ZIM|1|A|C|23
*
9ZIM|1|A|G|44
9ZIM|1|A|A|45
9ZIM|1|A|G|46
9ZIM|1|A|G|47
9ZIM|1|A|A|48
9ZIM|1|A|A|49
9ZIM|1|A|A|50
9ZIM|1|A|G|51
9ZIM|1|A|U|52
9ZIM|1|A|C|53
9ZIM|1|A|C|54
9ZIM|1|A|A|55
9ZIM|1|A|U|56
9ZIM|1|A|G|57
9ZIM|1|A|C|58
*
9ZIM|1|A|G|254
9ZIM|1|A|A|255
9ZIM|1|A|A|256
9ZIM|1|A|A|257
9ZIM|1|A|C|258
*
9ZIM|1|A|G|274
9ZIM|1|A|G|275
9ZIM|1|A|C|276
9ZIM|1|A|A|277
9ZIM|1|A|C|278
*
9ZIM|1|A|G|307
9ZIM|1|A|A|308
*
9ZIM|1|A|U|329
9ZIM|1|A|A|330
9ZIM|1|A|G|331
9ZIM|1|A|A|332
9ZIM|1|A|U|333
9ZIM|1|A|A|334
9ZIM|1|A|G|335
9ZIM|1|A|A|336
9ZIM|1|A|U|337
9ZIM|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component