J6_9ZIV_001

3D structure

PDB id

9ZIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 17

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIV|1|A|U|52, 9ZIV|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIV|1|A|C|21
9ZIV|1|A|G|22
9ZIV|1|A|C|23
*
9ZIV|1|A|G|44
9ZIV|1|A|A|45
9ZIV|1|A|G|46
9ZIV|1|A|G|47
9ZIV|1|A|A|48
9ZIV|1|A|A|49
9ZIV|1|A|A|50
9ZIV|1|A|G|51
9ZIV|1|A|U|52
9ZIV|1|A|C|53
9ZIV|1|A|C|54
9ZIV|1|A|A|55
9ZIV|1|A|U|56
9ZIV|1|A|G|57
9ZIV|1|A|C|58
*
9ZIV|1|A|G|254
9ZIV|1|A|A|255
9ZIV|1|A|A|256
9ZIV|1|A|A|257
9ZIV|1|A|C|258
*
9ZIV|1|A|G|274
9ZIV|1|A|G|275
9ZIV|1|A|C|276
9ZIV|1|A|A|277
9ZIV|1|A|C|278
*
9ZIV|1|A|G|307
9ZIV|1|A|A|308
*
9ZIV|1|A|U|329
9ZIV|1|A|A|330
9ZIV|1|A|G|331
9ZIV|1|A|A|332
9ZIV|1|A|U|333
9ZIV|1|A|A|334
9ZIV|1|A|G|335
9ZIV|1|A|A|336
9ZIV|1|A|U|337
9ZIV|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component