J6_9ZIX_001

3D structure

PDB id

9ZIX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 20

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIX|1|A|U|52, 9ZIX|1|A|A|256, 9ZIX|1|A|A|334, 9ZIX|1|A|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIX|1|A|C|21
9ZIX|1|A|G|22
9ZIX|1|A|C|23
*
9ZIX|1|A|G|44
9ZIX|1|A|A|45
9ZIX|1|A|G|46
9ZIX|1|A|G|47
9ZIX|1|A|A|48
9ZIX|1|A|A|49
9ZIX|1|A|A|50
9ZIX|1|A|G|51
9ZIX|1|A|U|52
9ZIX|1|A|C|53
9ZIX|1|A|C|54
9ZIX|1|A|A|55
9ZIX|1|A|U|56
9ZIX|1|A|G|57
9ZIX|1|A|C|58
*
9ZIX|1|A|G|254
9ZIX|1|A|A|255
9ZIX|1|A|A|256
9ZIX|1|A|A|257
9ZIX|1|A|C|258
*
9ZIX|1|A|G|274
9ZIX|1|A|G|275
9ZIX|1|A|C|276
9ZIX|1|A|A|277
9ZIX|1|A|C|278
*
9ZIX|1|A|G|307
9ZIX|1|A|A|308
*
9ZIX|1|A|U|329
9ZIX|1|A|A|330
9ZIX|1|A|G|331
9ZIX|1|A|A|332
9ZIX|1|A|U|333
9ZIX|1|A|A|334
9ZIX|1|A|G|335
9ZIX|1|A|A|336
9ZIX|1|A|U|337
9ZIX|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component