J6_9ZIY_001

3D structure

PDB id

9ZIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 21

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGC*GAGGAAAGUCCAUGC*GAAAC*GGCAC*GA*UAGAUAGAUG

Length

40 nucleotides

Bulged bases

9ZIY|1|A|U|52, 9ZIY|1|A|A|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZIY|1|A|C|21
9ZIY|1|A|G|22
9ZIY|1|A|C|23
*
9ZIY|1|A|G|44
9ZIY|1|A|A|45
9ZIY|1|A|G|46
9ZIY|1|A|G|47
9ZIY|1|A|A|48
9ZIY|1|A|A|49
9ZIY|1|A|A|50
9ZIY|1|A|G|51
9ZIY|1|A|U|52
9ZIY|1|A|C|53
9ZIY|1|A|C|54
9ZIY|1|A|A|55
9ZIY|1|A|U|56
9ZIY|1|A|G|57
9ZIY|1|A|C|58
*
9ZIY|1|A|G|254
9ZIY|1|A|A|255
9ZIY|1|A|A|256
9ZIY|1|A|A|257
9ZIY|1|A|C|258
*
9ZIY|1|A|G|274
9ZIY|1|A|G|275
9ZIY|1|A|C|276
9ZIY|1|A|A|277
9ZIY|1|A|C|278
*
9ZIY|1|A|G|307
9ZIY|1|A|A|308
*
9ZIY|1|A|U|329
9ZIY|1|A|A|330
9ZIY|1|A|G|331
9ZIY|1|A|A|332
9ZIY|1|A|U|333
9ZIY|1|A|A|334
9ZIY|1|A|G|335
9ZIY|1|A|A|336
9ZIY|1|A|U|337
9ZIY|1|A|G|338

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains

Chain B

Ribonuclease P protein component