J7_11DG_002
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 11DG|1|a|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11DG|1|a|C|817
11DG|1|a|G|818
11DG|1|a|A|819
11DG|1|a|A|820
11DG|1|a|A|821
11DG|1|a|G|822
*
11DG|1|a|C|835
11DG|1|a|G|836
11DG|1|a|C|837
11DG|1|a|C|838
*
11DG|1|a|G|940
11DG|1|a|A|941
11DG|1|a|G|942
11DG|1|a|A|943
11DG|1|a|C|944
11DG|1|a|A|945
11DG|1|a|C|946
*
11DG|1|a|G|971
11DG|1|a|A|972
11DG|1|a|A|973
11DG|1|a|G|974
11DG|1|a|A|975
11DG|1|a|G|976
*
11DG|1|a|C|987
11DG|1|a|A|988
11DG|1|a|G|989
11DG|1|a|A|990
11DG|1|a|C|991
*
11DG|1|a|G|1163
11DG|1|a|C|1164
*
11DG|1|a|G|1185
11DG|1|a|G|1186
11DG|1|a|G|1187
11DG|1|a|U|1188
11DG|1|a|A|1189
11DG|1|a|G|1190
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain k
- Large ribosomal subunit protein uL15
- Chain p
- 50S ribosomal protein L20
- Chain q
- Large ribosomal subunit protein bL21
- Chain y
- 50S ribosomal protein L30
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