J7_11HG_001

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

11HG|1|28|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|28|C|1666
11HG|1|28|A|1667
11HG|1|28|A|1668
11HG|1|28|A|1669
11HG|1|28|G|1670
11HG|1|28|U|1671
*
11HG|1|28|A|1684
11HG|1|28|G|1685
*
11HG|1|28|U|1852
11HG|1|28|G|1853
11HG|1|28|G|1854
11HG|1|28|G|1855
*
11HG|1|28|C|1879
11HG|1|28|G|1880
11HG|1|28|C|1881
11HG|1|28|U|1882
11HG|1|28|G|1883
11HG|1|28|C|1884
*
11HG|1|28|G|1895
11HG|1|28|A|1896
11HG|1|28|A|1897
11HG|1|28|C|1898
11HG|1|28|G|1899
*
11HG|1|28|C|2077
11HG|1|28|C|2078
*
11HG|1|28|G|2278
11HG|1|28|A|2279
11HG|1|28|G|2280
11HG|1|28|U|2281
11HG|1|28|A|2282
11HG|1|28|G|2283

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 13

60S ribosomal protein L13

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain 32

Large ribosomal subunit protein eL32

Chain 6

5S ribosomal RNA; 5S rRNA

Chain L4

60S ribosomal protein L4

Chain L7

60S ribosomal protein L7

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a

Chain ee

Large ribosomal subunit protein eL33