J7_12DP_002

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

12DP|1|2A|A|945, 12DP|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DP|1|2A|C|817
12DP|1|2A|G|818
12DP|1|2A|A|819
12DP|1|2A|A|820
12DP|1|2A|A|821
12DP|1|2A|U|822
*
12DP|1|2A|A|835
12DP|1|2A|G|836
*
12DP|1|2A|U|943
12DP|1|2A|G|944
12DP|1|2A|A|945
12DP|1|2A|G|946
*
12DP|1|2A|C|971
12DP|1|2A|G|972
12DP|1|2A|A|973
12DP|1|2A|G|974
12DP|1|2A|C|975
12DP|1|2A|G|975|||A
12DP|1|2A|C|976
*
12DP|1|2A|G|987
12DP|1|2A|A|988
12DP|1|2A|G|989
12DP|1|2A|A|990
12DP|1|2A|C|991
*
12DP|1|2A|G|1163
12DP|1|2A|G|1164
*
12DP|1|2A|C|1185
12DP|1|2A|G|1186
12DP|1|2A|G|1187
12DP|1|2A|U|1188
12DP|1|2A|A|1189
12DP|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21