Loop J7_12DQ

3D structure

PDB id: 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length: 35 nucleotides
Bulged bases: 12DQ|1|1A|G|530, 12DQ|1|1A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

12DQ|1|1A|A|8
12DQ|1|1A|U|9
12DQ|1|1A|G|10
12DQ|1|1A|G|11
12DQ|1|1A|U|12
12DQ|1|1A|A|13
12DQ|1|1A|A|14
12DQ|1|1A|G|15
*
12DQ|1|1A|U|525
12DQ|1|1A|A|526
12DQ|1|1A|C|527
12DQ|1|1A|A|528
12DQ|1|1A|A|529
12DQ|1|1A|G|530
12DQ|1|1A|C|531
*
12DQ|1|1A|G|2018
12DQ|1|1A|A|2019
12DQ|1|1A|A|2020
12DQ|1|1A|C|2021
12DQ|1|1A|U|2022
12DQ|1|1A|G|2023
*
12DQ|1|1A|C|2040
12DQ|1|1A|U|2041
12DQ|1|1A|A|2042
12DQ|1|1A|C|2043
*
12DQ|1|1A|G|2625
12DQ|1|1A|C|2626
12DQ|1|1A|G|2627
12DQ|1|1A|C|2628
12DQ|1|1A|A|2629
12DQ|1|1A|G|2630
*
12DQ|1|1A|C|2788
12DQ|1|1A|C|2789
*
12DQ|1|1A|G|2894
12DQ|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J7_12DQ_001